At the time being, the undergraduate programs offered by UNIDA Gontor are eighteen departments of seven faculties which have been accredited by the National Accreditation Body of the Republic of Indonesia. The names of the department are:


Faculty Department Available to
Faculty of Ushuluddin Comparative Study of Religion Male & Female
Aqeedah and Islamic Thought Male & Female
al-Quran and Tafsir Male & Female
Faculty of Islamic Education Islamic Education Male & Female
Arabic Language Teaching Male & Female
Faculty of  Shari’ah Comparative School of Jurisprudence and Law Male & Female
The Law of Islamic Economics Male & Female
Islamic Finance Male & Female
Faculty of Economics and Management Islamic Economics Male & Female
Management Male & Female
Faculty of Humanities International Relations Male & Female
Communication Science Male
Faculty of Science and Technology Informatics Engineering Male & Female
Agro-technology Male
Technology of Agricultural Industry Male
Faculty of Health Science Pharmacy Female
Nutrition Female
Occupational Safety and Health Male