Untuk menciptakan jaringan kerjasama antar universitas, UNIDA Gontor telah menandatangani MoU dengan berbagai universitas luar negeri. Adapun universitas luar negeri yang telah menandatangani MoU dengan UNIDA Gontor adalah sebagai berikut:

  1. International Islamic University, Malaysia, 11 November 2000.
  2. Institute of Leadership and Management, Lahore, 10 Mei 2002.
  3. Universiti Malaya, Malaysia, 2005.
  4. African International University, Khourtoum, Sudan, 2 Juli 2007.
  5. International Islami University, Islamabad, Pakistan, 2 Juli 2007.
  6. Institute of Asian Studies, Zaqaziq University, Egypt, 2 Juli 2007.
  7. Mu’assasah Darul Hadits al-Hasaniyyah, Rabat, Morocco, 28 Juli 2008.
  8. Majma’ Syeikh Ahmad Kaftharu Damascus, Syria, 20 April 2008.
  9. Al-fathul Islamy University, Damascus, Syiria, 20 April 2008.
  10. Universiti Kebangsaan Malaysia, 1 September 2008.
  11. Institut Pendidikan Guru Malaysia Tuanku Bainun, Pulau Pinang, Malaysia, 24 November 2008.
  12. Ibnu Sina Institute of Humanities, Paris, 11 Februari 2009.
  13. Sana University, Sana, Yemen, 11 Februari 2009.
  14. Islamic University of Europe, Rotterdam, Holland, 12 Februari 2009.
  15. Iman University, Sana, Yemen, 14 Februari 2009.
  16. Suez Canal University, Suez, Egypt, 16 Februari 2009.
  17. Kolej Universiti Islam Antarbangsa Selangor Malaysia, 26 Mei 2009.
  18. AScademic of Islamic Banking Kazakhstan, 26 Mei 2009.
  19. Islamic University of Europe Istanbul Turkey, 26 Mei 2009.
  20. Quad-l-Azzam University (QAU), Islamabad Pakistan, 5 Desember 2009.
  21. Ali Bait University, Yordan, 25 November 2009.
  22. Damascus University, Damascus, Syiria, 26 November 2009.
  23. Fateh University, Istanbul Turkey, 3 Desember 2009.
  24. The Istanbul Foundation for Science and Culture, 3 Desember 2009.
  25. University of the Punjab, Lahore Pakistan, 7 Desember 2009.
  26. Aligarh Muslim University, Aligarh India, 15 Desember 2009.
  27. Markfield Institue of Higher Education, Leicester, United Kingdom, 15 April 2010.
  28. Damascus University, Syria, 31 Maret 2010.
  29. Universiti Industri Selangor, Malaysia, 9 Januari 2011.
  30. Muhammadiyah Islamic College, Singapore, 8 Mei 2011.
  31. Universiti Sains Islam Malaysia, 25 Mei 2011.
  32. International Islamic University, Malaysia, 14 Juni 2011.
  33. Islamic University of Madinah, Saudi Arabia, 10 Juli 2011.
  34. Institut Pendidikan Universiti Islam Antarbangsa, Malaysia, 22 Oktober 2012.
  35. Jami’atu al-‘Ulum al-Islamiyah al-‘Alamiyah, Amman Yordania, 19 November 2012.
  36. Markazu Inmai lil Abhats wa al-Dirasat al-Mustaqbalah al-Mamlakah al-Maghribiyyah, 20 November 2012.
  37. Ali Bayt University Yordania, 21 November 2012.
  38. Markazu al-Qardhawi li al-Wasathiyah al-Islamiyah wa al-Tajdid, Qatar, 26 November 2012.
  39. Yala University, Thailand, 22 Januari 2012.
  40. International Language Academy, Amman Yordania, 4 Juli 2013.
  41. Qatar University, 6 November 2013.
  42. International Islamic University Islamabad, 27 Agustus 2013.
  43. Islamic University of Rotterdam, Belanda, 9 November 2013.
  44. Islamic University of Europe, Belanda, 11 November 2013.
  45. Faculty of Humanities, Universiteit Leiden, Belanda, 11 November 2013.
  46. KITLV, Belanda, 2013.
  47. Institut Europeen Des Sciences Humaines De Paris, 14 November 2013.
  48. Fatih Sultan Mehmet Vakif University Istanbul, Turki, 20 November 2013.
  49. Istanbul Sabahattin Zaim University, Turki, 27 November 2013.
  50. Jami’atu al-Zaituna, 14 Desember 2013.
  51. Jami’atu al-Yarmurk, Yordania, 20 Desember 2013.
  52. Vrij Universiteit, Belanda, 2014.
  53. Leiden Universiteit, Belanda, 2014.